WGS Analysis report

中文

MegaBOLT v2.1.0_release

1.Base summary

Base distribution

Base quality distribution

QC result

SampleDNBSEQ_PCR-Free_PE150_128Gbp
Read_length150:150
Read_raw841,160,794
Read_clean840,315,972
Read_clean_Rate99.9%
Q20_raw96%
Q30_raw86.76%
GC_raw41.07%
Q20_clean96%
Q30_clean86.75%
GC_clean41.07%

2.Alignment Information

Insert size distribution

Depth distribution

GC bias distribution

Alignment result

SampleDNBSEQ_PCR-Free_PE150_128Gbp
Mapping_Rate99.95%
PE_Mapping_Rate99.92%
Duplication_Rate0.97%
Mismatch_Rate0.75%
Insert_size404.8
Average_depth(rmdup)42.48
Coverage(>=1X)99.10%
Coverage(>=2X)99.01%
Coverage(>=3X)98.95%
Coverage(>=4X)98.89%
Coverage(>=5X)98.83%
Coverage(>=10X)98.50%
Coverage(>=20X)97.06%
Uniformity(>0.2f)98.57%

3.Variant calling

Variant statistics

SampleDNBSEQ_PCR-Free_PE150_128Gbp
Total_SNP4,028,217
dbSNP_rate95.16%
Novel_SNP194,913
Novel_SNP_Rate4.84%
Ti/Tv1.99
Total_INDEL957,538
dbINDEL_Rate78.83%