WES Analysis Report
MegaBOLT v2.3.0.0_release
| Sample | sample |
|---|---|
| Read_length | 100:100 |
| Read_raw | 60,000,000 |
| Read_clean | 59,207,022 |
| Read_clean_Rate | 98.68% |
| Q20_raw | 94.07% |
| Q20_1_raw | 97.85% |
| Q20_2_raw | 90.29% |
| Q30_raw | 84.31% |
| Q30_1_raw | 91.39% |
| Q30_2_raw | 77.23% |
| GC_raw | 47.48% |
| Q20_clean | 94.16% |
| Q20_1_clean | 97.89% |
| Q20_2_clean | 90.44% |
| Q30_clean | 84.41% |
| Q30_1_clean | 91.44% |
| Q30_2_clean | 77.38% |
| GC_clean | 47.58% |
| AT_1_Separation | 0.10% |
| AT_2_Separation | 0.90% |
| GC_1_Separation | 0.60% |
| GC_2_Separation | 0.80% |
| Sample | sample |
|---|---|
| Mapping_Rate | 99.79% |
| PE_Mapping_Rate | 99.73% |
| Unique_Rate | 89.93% |
| Duplication_Rate | 4.79% |
| Mismatch_Rate | 0.77% |
| Chimerical_Rate | 0.38% |
| Insert_size | 378.3 |
| Capture_Rate_on_Reads | 60.04% |
| Capture_Rate_on_Bases | 49.97% |
| Average_depth(rmdup) | 47.44 |
| Coverage(>=1X) | 99.40% |
| Coverage(>=2X) | 98.94% |
| Coverage(>=3X) | 98.41% |
| Coverage(>=4X) | 97.78% |
| Coverage(>=5X) | 97.06% |
| Coverage(>=10X) | 92.16% |
| Coverage(>=20X) | 77.36% |
| Coverage(>=30X) | 60.52% |
| Coverage(>=100X) | 8.21% |
| Uniformity(>0.2f) | 92.16% |
| FOLD_80_BASE_PENALTY | 2.742 |
| Sample | sample |
|---|---|
| Total_SNP | 49,971 |
| dbSNP_rate | 99.78% |
| Novel_SNP | 112 |
| Novel_SNP_Rate | 0.22% |
| Ti/Tv | 2.48 |
| Total_INDEL | 6,001 |
| dbINDEL_Rate | 98.2% |