WES Analysis Report
MegaBOLT v3.0.0.0_release
| Sample | V5 |
|---|---|
| Raw base number | 11,291,465,100 |
| Read length | 150:150 |
| Raw read number | 75,276,434 |
| Clean read number | 74,433,498 |
| Clean Read rate | 98.88% |
| Raw read Q20 | 95.14% |
| Clean read Q20 | 95.18% |
| Raw read1 Q20 | 95.87% |
| Clean read1 Q20 | 95.93% |
| Raw read2 Q20 | 94.42% |
| Clean read2 Q20 | 94.42% |
| Raw read Q30 | 86.31% |
| Clean read Q30 | 86.34% |
| Raw read1 Q30 | 87.84% |
| Clean read1 Q30 | 87.89% |
| Raw read2 Q30 | 84.79% |
| Clean read2 Q30 | 84.79% |
| Raw read GC rate | 43.48% |
| Clean read GC rate | 43.54% |
| Sample | V5 |
|---|---|
| Mapping Rate | 99.29% |
| PE Mapping Rate | 98.75% |
| Unique Rate | 93.02% |
| Duplication Rate | 5.64% |
| Mismatch Rate | 0.92% |
| Chimerical Rate | 1.64% |
| Insert size | 302.9 |
| Capture Rate on Reads | 75.41% |
| Capture Rate on Bases | 66.31% |
| Average depth(rmdup) | 100.63 |
| Coverage(>=1X) | 99.01% |
| Coverage(>=4X) | 98.17% |
| Coverage(>=10X) | 96.67% |
| Coverage(>=20X) | 92.37% |
| Coverage(>=30X) | 85.08% |
| Coverage(>=100X) | 34.23% |
| Uniformity(>0.2f) | 91.77% |
| FOLD_80_BASE_PENALTY | 2.877 |
| Sample | V5 |
|---|---|
| Total SNP number | 65,776 |
| dbSNP Rate | 98.93% |
| Novel SNP number | 702 |
| Novel SNP Rate | 1.07% |
| Ti/Tv | 2.48 |
| Total InDel number | 7,315 |
| dbInDel Rate | 68.56% |