WGS Analysis Report
MegaBOLT v3.0.0.0_release
| Sample | PCR-free-1-PE150-1 |
|---|---|
| Raw base number | 126,174,119,100 |
| Read length | 150:150 |
| Raw read number | 841,160,794 |
| Clean read number | 838,959,490 |
| Clean Read rate | 99.74% |
| Raw read Q20 | 96% |
| Clean read Q20 | 96% |
| Raw read1 Q20 | 96.07% |
| Clean read1 Q20 | 96.07% |
| Raw read2 Q20 | 95.93% |
| Clean read2 Q20 | 95.93% |
| Raw read Q30 | 86.76% |
| Clean read Q30 | 86.75% |
| Raw read1 Q30 | 87.4% |
| Clean read1 Q30 | 87.39% |
| Raw read2 Q30 | 86.12% |
| Clean read2 Q30 | 86.11% |
| Raw read GC rate | 41.07% |
| Clean read GC rate | 41.07% |
| Sample | PCR-free-1-PE150-1 |
|---|---|
| Mapping Rate | 99.95% |
| PE Mapping Rate | 99.92% |
| Unique Rate | 96.3% |
| Duplication Rate | 0.97% |
| Mismatch Rate | 0.75% |
| Insert size | 404.5 |
| Average depth(rmdup) | 42.8 |
| Coverage(>=1X) | 99.09% |
| Coverage(>=4X) | 98.88% |
| Coverage(>=10X) | 98.48% |
| Coverage(>=20X) | 97.03% |
| Coverage(>=30X) | 89.50% |
| Coverage(>=100X) | 0.32% |
| Uniformity(>0.2f) | 98.56% |
| Sample | PCR-free-1-PE150-1 |
|---|---|
| Total SNP number | 3,962,925 |
| dbSNP Rate | 94.07% |
| Novel SNP number | 234,820 |
| Novel SNP Rate | 5.93% |
| Ti/Tv | 1.97 |
| Total InDel number | 946,118 |
| dbInDel Rate | 77.4% |